Gene
Taestivum Traes 1DL B43AA5A52
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1DL_B43AA5A52 Traes_1DL_B43AA5A52 |
ta_iwgsc_1dl_v1_1042661 | 3 | 1531 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1DL_B43AA5A52.1 Traes_1DL_B43AA5A52.1 PAC:31925355 |
High | No | 708 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -27.782 AMFE: -0.628 GC content %: 44.209 | |
| Taestivum_Traes_1DL_B43AA5A52.2 Traes_1DL_B43AA5A52.2 PAC:31925354 |
High | No | 656 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -26.006 AMFE: -0.603 GC content %: 43.140 | |
| Taestivum_Traes_1DL_B43AA5A52.3 Traes_1DL_B43AA5A52.3 PAC:31925356 |
High | No | 685 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -27.664 AMFE: -0.623 GC content %: 44.380 | |
| Taestivum_Traes_1DL_B43AA5A52.4 Traes_1DL_B43AA5A52.4 PAC:31925357 |
High | No | 631 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -27.940 AMFE: -0.625 GC content %: 44.691 | |
| Taestivum_Traes_1DL_B43AA5A52.5 Traes_1DL_B43AA5A52.5 PAC:31925358 |
High | No | 730 | Get ORF Coding potential... Type: noncoding Potential: -1.323 Folding energies... MFEI: -26.096 AMFE: -0.621 GC content %: 42.055 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
