GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1DL_D1E82A0BF Traes_1DL_D1E82A0BF	ta_iwgsc_1dl_v1_2284929	625	6125	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1DL_D1E82A0BF.10 Traes_1DL_D1E82A0BF.10 PAC:31741910	High	No	1491		Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -28.283 AMFE: -0.629 GC content %: 44.936
Taestivum_Traes_1DL_D1E82A0BF.11 Traes_1DL_D1E82A0BF.11 PAC:31741911	High	No	1341		Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -26.734 AMFE: -0.614 GC content %: 43.550
Taestivum_Traes_1DL_D1E82A0BF.12 Traes_1DL_D1E82A0BF.12 PAC:31741912	High	No	1075		Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -27.507 AMFE: -0.597 GC content %: 46.047

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).