GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1DL_F16C961F7 Traes_1DL_F16C961F7	ta_iwgsc_1dl_v1_2259161	3744	10486	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1DL_F16C961F7.7 Traes_1DL_F16C961F7.7 PAC:31849801	High	No	1141		Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -25.118 AMFE: -0.612 GC content %: 41.017
Taestivum_Traes_1DL_F16C961F7.8 Traes_1DL_F16C961F7.8 PAC:31849802	High	No	1066		Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -24.559 AMFE: -0.606 GC content %: 40.525

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).