Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_1DL_F85296236 Traes_1DL_F85296236 |
ta_iwgsc_1dl_v1_2266794 | 3287 | 3591 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_1DL_F85296236.1 Traes_1DL_F85296236.1 PAC:31924234 |
Low | No | 243 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -27.778 AMFE: -0.549 GC content %: 50.617 | |
Taestivum_Traes_1DL_F85296236.2 Traes_1DL_F85296236.2 PAC:31924233 |
Low | No | 233 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -33.004 AMFE: -0.625 GC content %: 52.790 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_1DL_F85296236.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-21_SBi | |
Taestivum_Traes_1DL_F85296236.2 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-21_SBi |