GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1DS_261DBBDE7 Traes_1DS_261DBBDE7	ta_iwgsc_1ds_v1_1902978	20	586	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1DS_261DBBDE7.1 Traes_1DS_261DBBDE7.1 PAC:31762886	High	No	471		Get ORF Coding potential... Type: noncoding Potential: -0.923 Folding energies... MFEI: -23.079 AMFE: -0.575 GC content %: 40.127
Taestivum_Traes_1DS_261DBBDE7.2 Traes_1DS_261DBBDE7.2 PAC:31762887	High	No	391		Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -20.614 AMFE: -0.513 GC content %: 40.153

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).