Gene
Taestivum Traes 1DS 69B305004
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1DS_69B305004 Traes_1DS_69B305004 |
ta_iwgsc_1ds_v1_1907864 | 276 | 7454 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1DS_69B305004.10 Traes_1DS_69B305004.10 PAC:31937759 |
High | No | 1898 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -30.121 AMFE: -0.643 GC content %: 46.839 | |
| Taestivum_Traes_1DS_69B305004.11 Traes_1DS_69B305004.11 PAC:31937758 |
High | No | 1337 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -32.034 AMFE: -0.628 GC content %: 51.010 | |
| Taestivum_Traes_1DS_69B305004.12 Traes_1DS_69B305004.12 PAC:31937761 |
High | No | 1693 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -31.028 AMFE: -0.635 GC content %: 48.848 | |
| Taestivum_Traes_1DS_69B305004.13 Traes_1DS_69B305004.13 PAC:31937762 |
High | No | 568 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -28.239 AMFE: -0.723 GC content %: 39.085 | |
| Taestivum_Traes_1DS_69B305004.14 Traes_1DS_69B305004.14 PAC:31937760 |
High | No | 459 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -21.786 AMFE: -0.602 GC content %: 36.166 | |
| Taestivum_Traes_1DS_69B305004.8 Traes_1DS_69B305004.8 PAC:31937756 |
High | No | 1812 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -30.828 AMFE: -0.659 GC content %: 46.799 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
