GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1DS_87CA06255 Traes_1DS_87CA06255	ta_iwgsc_1ds_v1_1896639	2793	13965	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1DS_87CA06255.12 Traes_1DS_87CA06255.12 PAC:31959858	High	No	585		Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -33.709 AMFE: -0.694 GC content %: 48.547
Taestivum_Traes_1DS_87CA06255.13 Traes_1DS_87CA06255.13 PAC:31959859	High	No	474		Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -18.586 AMFE: -0.612 GC content %: 30.380

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).