Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_1DS_A727EB20C Traes_1DS_A727EB20C |
ta_iwgsc_1ds_v1_1907795 | 459 | 988 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_1DS_A727EB20C.1 Traes_1DS_A727EB20C.1 PAC:31928585 |
Low | No | 281 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -22.242 AMFE: -0.590 GC content %: 37.722 | |
Taestivum_Traes_1DS_A727EB20C.2 Traes_1DS_A727EB20C.2 PAC:31928586 |
Low | No | 237 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -29.283 AMFE: -0.708 GC content %: 41.350 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_1DS_A727EB20C.1 | RepBase (RepeatMasker) | 2014-01-31 | hAT-14N1_ZM | |
Taestivum_Traes_1DS_A727EB20C.2 | RepBase (RepeatMasker) | 2014-01-31 | ZhAT14_ZM |