GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1DS_CA4DC1519 Traes_1DS_CA4DC1519	ta_iwgsc_1ds_v1_1899837	5277	7838	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1DS_CA4DC1519.10 Traes_1DS_CA4DC1519.10 PAC:31771783	High	No	1700		Get ORF Coding potential... Type: noncoding Potential: -0.139 Folding energies... MFEI: -35.400 AMFE: -0.648 GC content %: 54.588
Taestivum_Traes_1DS_CA4DC1519.11 Traes_1DS_CA4DC1519.11 PAC:31771782	High	No	1723		Get ORF Coding potential... Type: noncoding Potential: -0.464 Folding energies... MFEI: -35.270 AMFE: -0.647 GC content %: 54.498
Taestivum_Traes_1DS_CA4DC1519.7 Traes_1DS_CA4DC1519.7 PAC:31771781	High	No	1795		Get ORF Coding potential... Type: noncoding Potential: -0.455 Folding energies... MFEI: -34.936 AMFE: -0.648 GC content %: 53.928

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).