GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1DS_E89FD5E32 Traes_1DS_E89FD5E32	ta_iwgsc_1ds_v1_887562	1729	3400	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1DS_E89FD5E32.1 Traes_1DS_E89FD5E32.1 PAC:31903279	High	No	732		Get ORF Coding potential... Type: noncoding Potential: -0.238 Folding energies... MFEI: -34.221 AMFE: -0.642 GC content %: 53.279
Taestivum_Traes_1DS_E89FD5E32.2 Traes_1DS_E89FD5E32.2 PAC:31903280	High	No	367		Get ORF Coding potential... Type: noncoding Potential: -0.359 Folding energies... MFEI: -38.638 AMFE: -0.636 GC content %: 60.763

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).