GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1DS_EF9196501 Traes_1DS_EF9196501	ta_iwgsc_1ds_v1_528147	1019	1680	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1DS_EF9196501.1 Traes_1DS_EF9196501.1 PAC:31748740	High	No	662		Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -32.175 AMFE: -0.630 GC content %: 51.057
Taestivum_Traes_1DS_EF9196501.2 Traes_1DS_EF9196501.2 PAC:31748739	High	No	216		Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -41.944 AMFE: -0.652 GC content %: 64.352

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).