GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1DS_FDA15FB471 Traes_1DS_FDA15FB471	ta_iwgsc_1ds_v1_1908466	2420	3229	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1DS_FDA15FB471.1 Traes_1DS_FDA15FB471.1 PAC:31736089	High	No	810		Get ORF Coding potential... Type: noncoding Potential: -0.622 Folding energies... MFEI: -31.074 AMFE: -0.623 GC content %: 49.877
Taestivum_Traes_1DS_FDA15FB471.2 Traes_1DS_FDA15FB471.2 PAC:31736088	High	No	279		Get ORF Coding potential... Type: noncoding Potential: -0.348 Folding energies... MFEI: -37.168 AMFE: -0.593 GC content %: 62.724

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).