Gene
Taestivum Traes 2AL 297B9C00F
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2AL_297B9C00F Traes_2AL_297B9C00F |
ta_iwgsc_2al_v1_6384438 | 3058 | 4671 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2AL_297B9C00F.1 Traes_2AL_297B9C00F.1 PAC:31874234 |
High | No | 577 | Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -28.458 AMFE: -0.608 GC content %: 46.794 | |
| Taestivum_Traes_2AL_297B9C00F.2 Traes_2AL_297B9C00F.2 PAC:31874236 |
High | No | 1076 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -32.286 AMFE: -0.683 GC content %: 47.305 | |
| Taestivum_Traes_2AL_297B9C00F.3 Traes_2AL_297B9C00F.3 PAC:31874233 |
High | No | 794 | Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -30.970 AMFE: -0.632 GC content %: 48.992 | |
| Taestivum_Traes_2AL_297B9C00F.4 Traes_2AL_297B9C00F.4 PAC:31874232 |
High | No | 823 | Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -30.510 AMFE: -0.622 GC content %: 49.089 | |
| Taestivum_Traes_2AL_297B9C00F.5 Traes_2AL_297B9C00F.5 PAC:31874235 |
High | No | 479 | Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -29.645 AMFE: -0.602 GC content %: 49.269 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
