GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2AL_2DF28AD3D Traes_2AL_2DF28AD3D	ta_iwgsc_2al_v1_6427003	1	3388	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2AL_2DF28AD3D.5 Traes_2AL_2DF28AD3D.5 PAC:31899597	High	No	925		Get ORF Coding potential... Type: noncoding Potential: -0.139 Folding energies... MFEI: -28.584 AMFE: -0.637 GC content %: 44.865
Taestivum_Traes_2AL_2DF28AD3D.6 Traes_2AL_2DF28AD3D.6 PAC:31899598	High	No	705		Get ORF Coding potential... Type: noncoding Potential: -0.506 Folding energies... MFEI: -28.851 AMFE: -0.640 GC content %: 45.106

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).