GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2AL_95E006E0B Traes_2AL_95E006E0B	ta_iwgsc_2al_v1_6390892	402	3566	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2AL_95E006E0B.2 Traes_2AL_95E006E0B.2 PAC:31879631	Low	No	998		Get ORF Coding potential... Type: coding Potential: 0.968 Folding energies... MFEI: -26.884 AMFE: -0.620 GC content %: 43.387
Taestivum_Traes_2AL_95E006E0B.4 Traes_2AL_95E006E0B.4 PAC:31879633	High	No	1171		Get ORF Coding potential... Type: noncoding Potential: -1.316 Folding energies... MFEI: -22.741 AMFE: -0.683 GC content %: 33.305

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).