GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2AL_AB724D1D1 Traes_2AL_AB724D1D1	ta_iwgsc_2al_v1_3148576	3	2338	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2AL_AB724D1D1.5 Traes_2AL_AB724D1D1.5 PAC:31895740	Low	No	785		Get ORF Coding potential... Type: noncoding Potential: -0.123 Folding energies... MFEI: -28.064 AMFE: -0.695 GC content %: 40.382
Taestivum_Traes_2AL_AB724D1D1.6 Traes_2AL_AB724D1D1.6 PAC:31895741	High	No	951		Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -23.470 AMFE: -0.627 GC content %: 37.434

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).