GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2AL_D31914DE6 Traes_2AL_D31914DE6	ta_iwgsc_2al_v1_6334176	3	4982	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2AL_D31914DE6.7 Traes_2AL_D31914DE6.7 PAC:31775249	High	No	855		Get ORF Coding potential... Type: noncoding Potential: -0.619 Folding energies... MFEI: -31.135 AMFE: -0.571 GC content %: 54.503
Taestivum_Traes_2AL_D31914DE6.8 Traes_2AL_D31914DE6.8 PAC:31775251	Low	No	549		Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -30.874 AMFE: -0.599 GC content %: 51.548

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).