Gene

Taestivum Traes 2AL D31914DE6

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Taestivum_Traes_2AL_D31914DE6
Traes_2AL_D31914DE6
ta_iwgsc_2al_v1_6334176 3 4982 Phytozome v2.2 Triticum_aestivum
Coding?
Yes


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Taestivum_Traes_2AL_D31914DE6.7
Traes_2AL_D31914DE6.7
PAC:31775249
High No 855
Coding potential...
Type: noncoding Potential: -0.619
Folding energies...
MFEI: -31.135 AMFE: -0.571
GC content
%: 54.503
Taestivum_Traes_2AL_D31914DE6.8
Traes_2AL_D31914DE6.8
PAC:31775251
Low No 549
Coding potential...
Type: noncoding Potential: -1.051
Folding energies...
MFEI: -30.874 AMFE: -0.599
GC content
%: 51.548


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Traes_2AL_D31914DE6.png