GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2AL_D75D86B04 Traes_2AL_D75D86B04	ta_iwgsc_2al_v1_4301973	4	2449	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2AL_D75D86B04.7 Traes_2AL_D75D86B04.7 PAC:31840199	High	No	598		Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -24.799 AMFE: -0.610 GC content %: 40.635
Taestivum_Traes_2AL_D75D86B04.8 Traes_2AL_D75D86B04.8 PAC:31840200	High	No	267		Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -28.352 AMFE: -0.591 GC content %: 47.940

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).