GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2AL_EB8B19AB9 Traes_2AL_EB8B19AB9	ta_iwgsc_2al_v1_6375793	4238	6047	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2AL_EB8B19AB9.2 Traes_2AL_EB8B19AB9.2 PAC:31909429	Low	No	480		Get ORF Coding potential... Type: noncoding Potential: -0.358 Folding energies... MFEI: -37.417 AMFE: -0.651 GC content %: 57.500
Taestivum_Traes_2AL_EB8B19AB9.3 Traes_2AL_EB8B19AB9.3 PAC:31909428	High	No	361		Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -33.629 AMFE: -0.523 GC content %: 64.266
Taestivum_Traes_2AL_EB8B19AB9.4 Traes_2AL_EB8B19AB9.4 PAC:31909430	High	No	681		Get ORF Coding potential... Type: noncoding Potential: -1.321 Folding energies... MFEI: -24.890 AMFE: -0.556 GC content %: 44.787

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).