GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2AS_0D223C483 Traes_2AS_0D223C483	ta_iwgsc_2as_v1_5204197	1837	4753	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2AS_0D223C483.10 Traes_2AS_0D223C483.10 PAC:31777099	High	No	2541		Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -23.601 AMFE: -0.588 GC content %: 40.142
Taestivum_Traes_2AS_0D223C483.11 Traes_2AS_0D223C483.11 PAC:31777103	High	No	2343		Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -23.000 AMFE: -0.570 GC content %: 40.333
Taestivum_Traes_2AS_0D223C483.12 Traes_2AS_0D223C483.12 PAC:31777102	High	No	2370		Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -22.785 AMFE: -0.567 GC content %: 40.169
Taestivum_Traes_2AS_0D223C483.13 Traes_2AS_0D223C483.13 PAC:31777107	High	No	1719		Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -23.720 AMFE: -0.563 GC content %: 42.118
Taestivum_Traes_2AS_0D223C483.14 Traes_2AS_0D223C483.14 PAC:31777108	High	No	1803		Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -23.295 AMFE: -0.561 GC content %: 41.486
Taestivum_Traes_2AS_0D223C483.15 Traes_2AS_0D223C483.15 PAC:31777109	High	No	2264		Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -24.024 AMFE: -0.594 GC content %: 40.415
Taestivum_Traes_2AS_0D223C483.16 Traes_2AS_0D223C483.16 PAC:31777110	High	No	1727		Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -23.208 AMFE: -0.556 GC content %: 41.749
Taestivum_Traes_2AS_0D223C483.3 Traes_2AS_0D223C483.3 PAC:31777106	High	No	1975		Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -23.706 AMFE: -0.562 GC content %: 42.177
Taestivum_Traes_2AS_0D223C483.4 Traes_2AS_0D223C483.4 PAC:31777104	High	No	2592		Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -24.244 AMFE: -0.602 GC content %: 40.239
Taestivum_Traes_2AS_0D223C483.5 Traes_2AS_0D223C483.5 PAC:31777105	High	No	2232		Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -23.759 AMFE: -0.582 GC content %: 40.815
Taestivum_Traes_2AS_0D223C483.6 Traes_2AS_0D223C483.6 PAC:31777100	High	No	1829		Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -23.565 AMFE: -0.608 GC content %: 38.764
Taestivum_Traes_2AS_0D223C483.7 Traes_2AS_0D223C483.7 PAC:31777097	High	No	1850		Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -23.497 AMFE: -0.605 GC content %: 38.811
Taestivum_Traes_2AS_0D223C483.8 Traes_2AS_0D223C483.8 PAC:31777098	High	No	2492		Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -24.121 AMFE: -0.592 GC content %: 40.730
Taestivum_Traes_2AS_0D223C483.9 Traes_2AS_0D223C483.9 PAC:31777101	High	No	2156		Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -23.699 AMFE: -0.573 GC content %: 41.327

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).