Gene
Taestivum Traes 2AS 172B21BF7
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2AS_172B21BF7 Traes_2AS_172B21BF7 |
ta_iwgsc_2as_v1_5216300 | 4615 | 10448 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2AS_172B21BF7.14 Traes_2AS_172B21BF7.14 PAC:31816011 |
High | No | 2540 | Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -31.059 AMFE: -0.685 GC content %: 45.354 | |
| Taestivum_Traes_2AS_172B21BF7.15 Traes_2AS_172B21BF7.15 PAC:31816010 |
High | No | 3537 | Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -29.664 AMFE: -0.699 GC content %: 42.409 | |
| Taestivum_Traes_2AS_172B21BF7.16 Traes_2AS_172B21BF7.16 PAC:31816012 |
Low | No | 3028 | Get ORF Coding potential... Type: noncoding Potential: -0.026 Folding energies... MFEI: -29.653 AMFE: -0.675 GC content %: 43.923 | |
| Taestivum_Traes_2AS_172B21BF7.17 Traes_2AS_172B21BF7.17 PAC:31816013 |
High | No | 1517 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -28.299 AMFE: -0.695 GC content %: 40.738 | |
| Taestivum_Traes_2AS_172B21BF7.18 Traes_2AS_172B21BF7.18 PAC:31816014 |
Low | No | 2763 | Get ORF Coding potential... Type: noncoding Potential: -0.235 Folding energies... MFEI: -26.402 AMFE: -0.695 GC content %: 38.002 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
