Gene
Taestivum Traes 2AS 23D6687A8
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2AS_23D6687A8 Traes_2AS_23D6687A8 |
ta_iwgsc_2as_v1_5257503 | 2176 | 10002 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2AS_23D6687A8.10 Traes_2AS_23D6687A8.10 PAC:31764106 |
High | No | 1784 | Get ORF Coding potential... Type: noncoding Potential: -0.484 Folding energies... MFEI: -32.410 AMFE: -0.668 GC content %: 48.543 | |
| Taestivum_Traes_2AS_23D6687A8.11 Traes_2AS_23D6687A8.11 PAC:31764107 |
High | No | 1817 | Get ORF Coding potential... Type: noncoding Potential: -0.360 Folding energies... MFEI: -31.318 AMFE: -0.650 GC content %: 48.211 | |
| Taestivum_Traes_2AS_23D6687A8.12 Traes_2AS_23D6687A8.12 PAC:31764109 |
High | No | 1588 | Get ORF Coding potential... Type: noncoding Potential: -0.539 Folding energies... MFEI: -32.708 AMFE: -0.657 GC content %: 49.811 | |
| Taestivum_Traes_2AS_23D6687A8.13 Traes_2AS_23D6687A8.13 PAC:31764108 |
High | No | 1406 | Get ORF Coding potential... Type: noncoding Potential: -0.523 Folding energies... MFEI: -30.491 AMFE: -0.637 GC content %: 47.866 | |
| Taestivum_Traes_2AS_23D6687A8.14 Traes_2AS_23D6687A8.14 PAC:31764112 |
High | No | 1884 | Get ORF Coding potential... Type: noncoding Potential: -0.405 Folding energies... MFEI: -31.536 AMFE: -0.657 GC content %: 47.983 | |
| Taestivum_Traes_2AS_23D6687A8.15 Traes_2AS_23D6687A8.15 PAC:31764111 |
High | No | 1882 | Get ORF Coding potential... Type: noncoding Potential: -0.405 Folding energies... MFEI: -31.495 AMFE: -0.656 GC content %: 47.981 | |
| Taestivum_Traes_2AS_23D6687A8.16 Traes_2AS_23D6687A8.16 PAC:31764110 |
High | No | 1277 | Get ORF Coding potential... Type: noncoding Potential: -0.295 Folding energies... MFEI: -26.409 AMFE: -0.644 GC content %: 41.034 | |
| Taestivum_Traes_2AS_23D6687A8.17 Traes_2AS_23D6687A8.17 PAC:31764113 |
High | No | 1591 | Get ORF Coding potential... Type: noncoding Potential: -0.369 Folding energies... MFEI: -27.099 AMFE: -0.647 GC content %: 41.860 | |
| Taestivum_Traes_2AS_23D6687A8.18 Traes_2AS_23D6687A8.18 PAC:31764117 |
High | No | 1712 | Get ORF Coding potential... Type: noncoding Potential: -0.394 Folding energies... MFEI: -29.850 AMFE: -0.644 GC content %: 46.320 | |
| Taestivum_Traes_2AS_23D6687A8.19 Traes_2AS_23D6687A8.19 PAC:31764114 |
High | No | 1814 | Get ORF Coding potential... Type: noncoding Potential: -0.400 Folding energies... MFEI: -29.908 AMFE: -0.646 GC content %: 46.307 | |
| Taestivum_Traes_2AS_23D6687A8.20 Traes_2AS_23D6687A8.20 PAC:31764116 |
High | No | 1981 | Get ORF Coding potential... Type: noncoding Potential: -0.411 Folding energies... MFEI: -31.703 AMFE: -0.662 GC content %: 47.905 | |
| Taestivum_Traes_2AS_23D6687A8.21 Traes_2AS_23D6687A8.21 PAC:31764115 |
High | No | 2187 | Get ORF Coding potential... Type: noncoding Potential: -0.424 Folding energies... MFEI: -32.082 AMFE: -0.666 GC content %: 48.148 | |
| Taestivum_Traes_2AS_23D6687A8.22 Traes_2AS_23D6687A8.22 PAC:31764118 |
High | No | 1567 | Get ORF Coding potential... Type: noncoding Potential: -0.342 Folding energies... MFEI: -28.790 AMFE: -0.636 GC content %: 45.246 | |
| Taestivum_Traes_2AS_23D6687A8.23 Traes_2AS_23D6687A8.23 PAC:31764120 |
High | No | 1793 | Get ORF Coding potential... Type: noncoding Potential: -0.485 Folding energies... MFEI: -32.337 AMFE: -0.663 GC content %: 48.801 | |
| Taestivum_Traes_2AS_23D6687A8.24 Traes_2AS_23D6687A8.24 PAC:31764119 |
High | No | 1854 | Get ORF Coding potential... Type: noncoding Potential: -0.363 Folding energies... MFEI: -31.965 AMFE: -0.657 GC content %: 48.652 | |
| Taestivum_Traes_2AS_23D6687A8.25 Traes_2AS_23D6687A8.25 PAC:31764123 |
High | No | 1586 | Get ORF Coding potential... Type: noncoding Potential: -0.539 Folding energies... MFEI: -32.661 AMFE: -0.656 GC content %: 49.811 | |
| Taestivum_Traes_2AS_23D6687A8.26 Traes_2AS_23D6687A8.26 PAC:31764122 |
High | No | 1698 | Get ORF Coding potential... Type: noncoding Potential: -0.477 Folding energies... MFEI: -32.527 AMFE: -0.665 GC content %: 48.940 | |
| Taestivum_Traes_2AS_23D6687A8.27 Traes_2AS_23D6687A8.27 PAC:31764121 |
High | No | 1688 | Get ORF Coding potential... Type: noncoding Potential: -0.477 Folding energies... MFEI: -32.571 AMFE: -0.665 GC content %: 48.993 | |
| Taestivum_Traes_2AS_23D6687A8.28 Traes_2AS_23D6687A8.28 PAC:31764124 |
High | No | 1302 | Get ORF Coding potential... Type: noncoding Potential: -0.322 Folding energies... MFEI: -26.700 AMFE: -0.622 GC content %: 42.934 | |
| Taestivum_Traes_2AS_23D6687A8.29 Traes_2AS_23D6687A8.29 PAC:31764125 |
High | No | 1520 | Get ORF Coding potential... Type: noncoding Potential: -0.462 Folding energies... MFEI: -30.428 AMFE: -0.650 GC content %: 46.842 | |
| Taestivum_Traes_2AS_23D6687A8.30 Traes_2AS_23D6687A8.30 PAC:31764105 |
High | No | 1008 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -23.810 AMFE: -0.590 GC content %: 40.377 | |
| Taestivum_Traes_2AS_23D6687A8.7 Traes_2AS_23D6687A8.7 PAC:31764102 |
High | No | 1690 | Get ORF Coding potential... Type: noncoding Potential: -0.547 Folding energies... MFEI: -32.840 AMFE: -0.662 GC content %: 49.586 | |
| Taestivum_Traes_2AS_23D6687A8.8 Traes_2AS_23D6687A8.8 PAC:31764103 |
High | No | 1873 | Get ORF Coding potential... Type: noncoding Potential: -0.490 Folding energies... MFEI: -25.745 AMFE: -0.630 GC content %: 40.897 | |
| Taestivum_Traes_2AS_23D6687A8.9 Traes_2AS_23D6687A8.9 PAC:31764104 |
High | No | 1909 | Get ORF Coding potential... Type: noncoding Potential: -0.319 Folding energies... MFEI: -30.054 AMFE: -0.639 GC content %: 47.040 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
