GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2AS_364A27137 Traes_2AS_364A27137	ta_iwgsc_2as_v1_5234174	4	876	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2AS_364A27137.1 Traes_2AS_364A27137.1 PAC:31736158	High	No	688		Get ORF Coding potential... Type: noncoding Potential: -0.690 Folding energies... MFEI: -34.142 AMFE: -0.620 GC content %: 55.087
Taestivum_Traes_2AS_364A27137.2 Traes_2AS_364A27137.2 PAC:31736159	High	No	320		Get ORF Coding potential... Type: noncoding Potential: -0.750 Folding energies... MFEI: -33.406 AMFE: -0.557 GC content %: 60.000

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).