Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_2AS_3EC4D7685 Traes_2AS_3EC4D7685 |
ta_iwgsc_2as_v1_5248261 | 2611 | 4830 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_2AS_3EC4D7685.3 Traes_2AS_3EC4D7685.3 PAC:31934622 |
Low | No | 1822 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -30.220 AMFE: -0.731 GC content %: 41.328 | |
Taestivum_Traes_2AS_3EC4D7685.4 Traes_2AS_3EC4D7685.4 PAC:31934623 |
Low | No | 828 | Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -30.000 AMFE: -0.702 GC content %: 42.754 | |
Taestivum_Traes_2AS_3EC4D7685.5 Traes_2AS_3EC4D7685.5 PAC:31934624 |
Low | No | 702 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -28.946 AMFE: -0.666 GC content %: 43.447 | |
Taestivum_Traes_2AS_3EC4D7685.6 Traes_2AS_3EC4D7685.6 PAC:31934625 |
Low | No | 662 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -29.350 AMFE: -0.675 GC content %: 43.505 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_2AS_3EC4D7685.6 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-32_ZM | |
Taestivum_Traes_2AS_3EC4D7685.3 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-32_ZM | |
Taestivum_Traes_2AS_3EC4D7685.4 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-32_ZM | |
Taestivum_Traes_2AS_3EC4D7685.5 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-32_ZM |