GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2AS_703CA7F25 Traes_2AS_703CA7F25	ta_iwgsc_2as_v1_5228178	368	2707	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2AS_703CA7F25.1 Traes_2AS_703CA7F25.1 PAC:32003114	High	No	827		Get ORF Coding potential... Type: noncoding Potential: -0.816 Folding energies... MFEI: -29.903 AMFE: -0.611 GC content %: 48.972
Taestivum_Traes_2AS_703CA7F25.2 Traes_2AS_703CA7F25.2 PAC:32003115	High	No	731		Get ORF Coding potential... Type: noncoding Potential: -0.783 Folding energies... MFEI: -27.661 AMFE: -0.579 GC content %: 47.743
Taestivum_Traes_2AS_703CA7F25.3 Traes_2AS_703CA7F25.3 PAC:32003116	Low	No	285		Get ORF Coding potential... Type: noncoding Potential: -0.650 Folding energies... MFEI: -25.088 AMFE: -0.497 GC content %: 50.526

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).