Gene
Taestivum Traes 2AS 738537021
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2AS_738537021 Traes_2AS_738537021 |
ta_iwgsc_2as_v1_5280225 | 1330 | 3738 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2AS_738537021.1 Traes_2AS_738537021.1 PAC:31755526 |
High | No | 1002 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -28.822 AMFE: -0.624 GC content %: 46.208 | |
| Taestivum_Traes_2AS_738537021.2 Traes_2AS_738537021.2 PAC:31755525 |
High | No | 1048 | Get ORF Coding potential... Type: noncoding Potential: -1.011 Folding energies... MFEI: -29.800 AMFE: -0.633 GC content %: 47.042 | |
| Taestivum_Traes_2AS_738537021.3 Traes_2AS_738537021.3 PAC:31755527 |
High | No | 622 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -31.736 AMFE: -0.619 GC content %: 51.286 | |
| Taestivum_Traes_2AS_738537021.4 Traes_2AS_738537021.4 PAC:31755528 |
High | No | 784 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -32.832 AMFE: -0.645 GC content %: 50.893 | |
| Taestivum_Traes_2AS_738537021.5 Traes_2AS_738537021.5 PAC:31755529 |
High | No | 616 | Get ORF Coding potential... Type: noncoding Potential: -1.316 Folding energies... MFEI: -29.692 AMFE: -0.612 GC content %: 48.539 | |
| Taestivum_Traes_2AS_738537021.6 Traes_2AS_738537021.6 PAC:31755530 |
High | No | 528 | Get ORF Coding potential... Type: noncoding Potential: -1.298 Folding energies... MFEI: -25.246 AMFE: -0.614 GC content %: 41.098 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
