GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2AS_A59D198ED Traes_2AS_A59D198ED	ta_iwgsc_2as_v1_5298082	1	2884	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2AS_A59D198ED.1 Traes_2AS_A59D198ED.1 PAC:31980596	High	No	1126		Get ORF Coding potential... Type: noncoding Potential: -0.029 Folding energies... MFEI: -28.082 AMFE: -0.643 GC content %: 43.694
Taestivum_Traes_2AS_A59D198ED.2 Traes_2AS_A59D198ED.2 PAC:31980595	High	No	1023		Get ORF Coding potential... Type: noncoding Potential: -0.008 Folding energies... MFEI: -29.032 AMFE: -0.650 GC content %: 44.673
Taestivum_Traes_2AS_A59D198ED.3 Traes_2AS_A59D198ED.3 PAC:31980597	High	No	1098		Get ORF Coding potential... Type: noncoding Potential: -0.106 Folding energies... MFEI: -28.133 AMFE: -0.644 GC content %: 43.716

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).