GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2AS_C169C7717 Traes_2AS_C169C7717	ta_iwgsc_2as_v1_5183689	2729	4978	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2AS_C169C7717.1 Traes_2AS_C169C7717.1 PAC:31950533	High	No	816		Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -37.806 AMFE: -0.662 GC content %: 57.108
Taestivum_Traes_2AS_C169C7717.4 Traes_2AS_C169C7717.4 PAC:31950532	High	No	462		Get ORF Coding potential... Type: noncoding Potential: -0.666 Folding energies... MFEI: -46.039 AMFE: -0.684 GC content %: 67.316
Taestivum_Traes_2AS_C169C7717.5 Traes_2AS_C169C7717.5 PAC:31950534	High	No	684		Get ORF Coding potential... Type: noncoding Potential: -0.850 Folding energies... MFEI: -37.076 AMFE: -0.666 GC content %: 55.702

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).