GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2AS_CA4B6857D Traes_2AS_CA4B6857D	ta_iwgsc_2as_v1_1733519	350	2371	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2AS_CA4B6857D.1 Traes_2AS_CA4B6857D.1 PAC:31880707	Low	No	382		Get ORF Coding potential... Type: noncoding Potential: -0.545 Folding energies... MFEI: -34.948 AMFE: -0.578 GC content %: 60.471
Taestivum_Traes_2AS_CA4B6857D.2 Traes_2AS_CA4B6857D.2 PAC:31880708	Low	No	1457		Get ORF Coding potential... Type: noncoding Potential: -0.462 Folding energies... MFEI: -30.460 AMFE: -0.664 GC content %: 45.848

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).