GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2AS_F113C4119 Traes_2AS_F113C4119	ta_iwgsc_2as_v1_3038965	5611	6924	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2AS_F113C4119.3 Traes_2AS_F113C4119.3 PAC:31806373	Low	No	822		Get ORF Coding potential... Type: noncoding Potential: -0.116 Folding energies... MFEI: -30.061 AMFE: -0.640 GC content %: 46.959
Taestivum_Traes_2AS_F113C4119.4 Traes_2AS_F113C4119.4 PAC:31806374	Low	No	429		Get ORF Coding potential... Type: noncoding Potential: -0.695 Folding energies... MFEI: -29.394 AMFE: -0.609 GC content %: 48.252

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).