GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BL_15A54E67F Traes_2BL_15A54E67F	ta_iwgsc_2bl_v1_3869475	832	9276	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BL_15A54E67F.10 Traes_2BL_15A54E67F.10 PAC:31868406	High	No	423		Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -21.702 AMFE: -0.600 GC content %: 36.170
Taestivum_Traes_2BL_15A54E67F.9 Traes_2BL_15A54E67F.9 PAC:31868405	High	No	467		Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -20.728 AMFE: -0.580 GC content %: 35.760

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).