GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BL_25D91DEBC Traes_2BL_25D91DEBC	ta_iwgsc_2bl_v1_7964285	1	1755	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BL_25D91DEBC.4 Traes_2BL_25D91DEBC.4 PAC:31980270	High	No	535		Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -44.673 AMFE: -0.681 GC content %: 65.607
Taestivum_Traes_2BL_25D91DEBC.5 Traes_2BL_25D91DEBC.5 PAC:31980271	Low	No	1530		Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -36.098 AMFE: -0.688 GC content %: 52.484

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).