GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BL_3438909F8 Traes_2BL_3438909F8	ta_iwgsc_2bl_v1_7984074	4433	6057	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BL_3438909F8.1 Traes_2BL_3438909F8.1 PAC:31888015	High	No	1225		Get ORF Coding potential... Type: noncoding Potential: -0.501 Folding energies... MFEI: -28.008 AMFE: -0.497 GC content %: 56.408
Taestivum_Traes_2BL_3438909F8.2 Traes_2BL_3438909F8.2 PAC:31888016	High	No	1205		Get ORF Coding potential... Type: noncoding Potential: -0.803 Folding energies... MFEI: -27.900 AMFE: -0.520 GC content %: 53.610
Taestivum_Traes_2BL_3438909F8.3 Traes_2BL_3438909F8.3 PAC:31888018	High	No	1073		Get ORF Coding potential... Type: noncoding Potential: -0.822 Folding energies... MFEI: -27.922 AMFE: -0.513 GC content %: 54.427
Taestivum_Traes_2BL_3438909F8.4 Traes_2BL_3438909F8.4 PAC:31888017	High	No	1073		Get ORF Coding potential... Type: noncoding Potential: -0.828 Folding energies... MFEI: -27.829 AMFE: -0.512 GC content %: 54.334

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).