GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BL_350AC2704 Traes_2BL_350AC2704	ta_iwgsc_2bl_v1_7938602	1895	6808	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BL_350AC2704.4 Traes_2BL_350AC2704.4 PAC:31757874	Low	No	1363		Get ORF Coding potential... Type: coding Potential: 0.980 Folding energies... MFEI: -33.397 AMFE: -0.655 GC content %: 50.990
Taestivum_Traes_2BL_350AC2704.5 Traes_2BL_350AC2704.5 PAC:31757875	Low	No	1342		Get ORF Coding potential... Type: coding Potential: 0.910 Folding energies... MFEI: -33.443 AMFE: -0.653 GC content %: 51.192
Taestivum_Traes_2BL_350AC2704.6 Traes_2BL_350AC2704.6 PAC:31757876	Low	No	1277		Get ORF Coding potential... Type: coding Potential: 0.853 Folding energies... MFEI: -34.080 AMFE: -0.662 GC content %: 51.449

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).