Gene
Taestivum Traes 2BL 6A810AF4E
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2BL_6A810AF4E Traes_2BL_6A810AF4E |
ta_iwgsc_2bl_v1_8013072 | 5565 | 11858 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2BL_6A810AF4E.1 Traes_2BL_6A810AF4E.1 PAC:31885770 |
High | No | 677 | Get ORF Coding potential... Type: noncoding Potential: -0.768 Folding energies... MFEI: -46.027 AMFE: -0.696 GC content %: 66.174 | |
| Taestivum_Traes_2BL_6A810AF4E.2 Traes_2BL_6A810AF4E.2 PAC:31885767 |
High | No | 999 | Get ORF Coding potential... Type: noncoding Potential: -0.773 Folding energies... MFEI: -41.031 AMFE: -0.695 GC content %: 59.059 | |
| Taestivum_Traes_2BL_6A810AF4E.3 Traes_2BL_6A810AF4E.3 PAC:31885768 |
High | No | 943 | Get ORF Coding potential... Type: noncoding Potential: -0.831 Folding energies... MFEI: -41.103 AMFE: -0.691 GC content %: 59.491 | |
| Taestivum_Traes_2BL_6A810AF4E.4 Traes_2BL_6A810AF4E.4 PAC:31885769 |
High | No | 1019 | Get ORF Coding potential... Type: noncoding Potential: -0.853 Folding energies... MFEI: -38.970 AMFE: -0.669 GC content %: 58.292 | |
| Taestivum_Traes_2BL_6A810AF4E.5 Traes_2BL_6A810AF4E.5 PAC:31885772 |
High | No | 1166 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -39.563 AMFE: -0.680 GC content %: 58.148 | |
| Taestivum_Traes_2BL_6A810AF4E.6 Traes_2BL_6A810AF4E.6 PAC:31885771 |
High | No | 722 | Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -44.003 AMFE: -0.672 GC content %: 65.512 | |
| Taestivum_Traes_2BL_6A810AF4E.7 Traes_2BL_6A810AF4E.7 PAC:31885773 |
High | No | 749 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -43.712 AMFE: -0.678 GC content %: 64.486 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
