Gene

Taestivum Traes 2BL 6CB02E766

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Taestivum_Traes_2BL_6CB02E766
Traes_2BL_6CB02E766
ta_iwgsc_2bl_v1_8075051 2083 2694 Phytozome v2.2 Triticum_aestivum
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Taestivum_Traes_2BL_6CB02E766.1
Traes_2BL_6CB02E766.1
PAC:31989793
Low No 612
Coding potential...
Type: noncoding Potential: -0.524
Folding energies...
MFEI: -34.575 AMFE: -0.589
GC content
%: 58.660


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Taestivum_Traes_2BL_6CB02E766.1  RepBase (RepeatMasker) 2014-01-31 VEJU1_TM-LTR


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Traes_2BL_6CB02E766.png