Gene
Taestivum Traes 2BL 6EA5B8562
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2BL_6EA5B8562 Traes_2BL_6EA5B8562 |
ta_iwgsc_2bl_v1_8040650 | 3230 | 5074 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2BL_6EA5B8562.1 Traes_2BL_6EA5B8562.1 PAC:31853606 |
High | No | 967 | Get ORF Coding potential... Type: noncoding Potential: -0.719 Folding energies... MFEI: -30.889 AMFE: -0.605 GC content %: 51.086 | |
| Taestivum_Traes_2BL_6EA5B8562.2 Traes_2BL_6EA5B8562.2 PAC:31853605 |
High | No | 1264 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -29.462 AMFE: -0.587 GC content %: 50.158 | |
| Taestivum_Traes_2BL_6EA5B8562.3 Traes_2BL_6EA5B8562.3 PAC:31853604 |
High | No | 999 | Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -30.300 AMFE: -0.582 GC content %: 52.052 | |
| Taestivum_Traes_2BL_6EA5B8562.4 Traes_2BL_6EA5B8562.4 PAC:31853607 |
High | No | 954 | Get ORF Coding potential... Type: noncoding Potential: -0.714 Folding energies... MFEI: -31.090 AMFE: -0.603 GC content %: 51.572 | |
| Taestivum_Traes_2BL_6EA5B8562.5 Traes_2BL_6EA5B8562.5 PAC:31853608 |
High | No | 1178 | Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -30.535 AMFE: -0.622 GC content %: 49.066 | |
| Taestivum_Traes_2BL_6EA5B8562.6 Traes_2BL_6EA5B8562.6 PAC:31853609 |
High | No | 573 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -22.129 AMFE: -0.631 GC content %: 35.079 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
