GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BL_72B6D504E Traes_2BL_72B6D504E	ta_iwgsc_2bl_v1_8014542	1576	4760	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BL_72B6D504E.1 Traes_2BL_72B6D504E.1 PAC:31812106	Low	No	1298		Get ORF Coding potential... Type: noncoding Potential: -0.651 Folding energies... MFEI: -29.838 AMFE: -0.675 GC content %: 44.222
Taestivum_Traes_2BL_72B6D504E.2 Traes_2BL_72B6D504E.2 PAC:31812104	Low	No	606		Get ORF Coding potential... Type: noncoding Potential: -0.461 Folding energies... MFEI: -37.987 AMFE: -0.698 GC content %: 54.455
Taestivum_Traes_2BL_72B6D504E.3 Traes_2BL_72B6D504E.3 PAC:31812105	High	No	554		Get ORF Coding potential... Type: noncoding Potential: -0.435 Folding energies... MFEI: -38.953 AMFE: -0.696 GC content %: 55.957

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).