GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BL_86A6C6D2A Traes_2BL_86A6C6D2A	ta_iwgsc_2bl_v1_3472207	1	1598	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BL_86A6C6D2A.1 Traes_2BL_86A6C6D2A.1 PAC:31857628	Low	No	1255		Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -28.598 AMFE: -0.702 GC content %: 40.717
Taestivum_Traes_2BL_86A6C6D2A.2 Traes_2BL_86A6C6D2A.2 PAC:31857626	Low	No	927		Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -27.335 AMFE: -0.672 GC content %: 40.669
Taestivum_Traes_2BL_86A6C6D2A.3 Traes_2BL_86A6C6D2A.3 PAC:31857627	Low	No	1598		Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -27.904 AMFE: -0.699 GC content %: 39.925

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).