GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BL_96EED9058 Traes_2BL_96EED9058	ta_iwgsc_2bl_v1_1938490	1	771	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BL_96EED9058.1 Traes_2BL_96EED9058.1 PAC:31946179	High	No	205		Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -21.951 AMFE: -0.429 GC content %: 51.220
Taestivum_Traes_2BL_96EED9058.2 Traes_2BL_96EED9058.2 PAC:31946178	High	No	745		Get ORF Coding potential... Type: noncoding Potential: -1.195 Folding energies... MFEI: -23.503 AMFE: -0.586 GC content %: 40.134

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).