GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BL_9A9842AA7 Traes_2BL_9A9842AA7	ta_iwgsc_2bl_v1_7969959	4	2345	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BL_9A9842AA7.1 Traes_2BL_9A9842AA7.1 PAC:32023063	High	No	2334		Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -28.950 AMFE: -0.664 GC content %: 43.573
Taestivum_Traes_2BL_9A9842AA7.2 Traes_2BL_9A9842AA7.2 PAC:32023064	High	No	897		Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -26.087 AMFE: -0.557 GC content %: 46.823

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).