Gene
Taestivum Traes 2BL A0FFC447F
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2BL_A0FFC447F Traes_2BL_A0FFC447F |
ta_iwgsc_2bl_v1_8047194 | 1534 | 7198 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2BL_A0FFC447F.1 Traes_2BL_A0FFC447F.1 PAC:31764432 |
Low | No | 1989 | Get ORF Coding potential... Type: noncoding Potential: -0.383 Folding energies... MFEI: -25.762 AMFE: -0.667 GC content %: 38.612 | |
| Taestivum_Traes_2BL_A0FFC447F.10 Traes_2BL_A0FFC447F.10 PAC:31764424 |
Low | No | 2357 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -28.850 AMFE: -0.659 GC content %: 43.784 | |
| Taestivum_Traes_2BL_A0FFC447F.11 Traes_2BL_A0FFC447F.11 PAC:31764422 |
Low | No | 3151 | Get ORF Coding potential... Type: noncoding Potential: -0.432 Folding energies... MFEI: -27.788 AMFE: -0.664 GC content %: 41.828 | |
| Taestivum_Traes_2BL_A0FFC447F.12 Traes_2BL_A0FFC447F.12 PAC:31764419 |
Low | No | 3023 | Get ORF Coding potential... Type: noncoding Potential: -0.378 Folding energies... MFEI: -27.665 AMFE: -0.659 GC content %: 41.978 | |
| Taestivum_Traes_2BL_A0FFC447F.13 Traes_2BL_A0FFC447F.13 PAC:31764423 |
Low | No | 2195 | Get ORF Coding potential... Type: noncoding Potential: -0.417 Folding energies... MFEI: -29.631 AMFE: -0.664 GC content %: 44.601 | |
| Taestivum_Traes_2BL_A0FFC447F.14 Traes_2BL_A0FFC447F.14 PAC:31764420 |
Low | No | 1844 | Get ORF Coding potential... Type: noncoding Potential: -0.332 Folding energies... MFEI: -30.027 AMFE: -0.653 GC content %: 45.987 | |
| Taestivum_Traes_2BL_A0FFC447F.15 Traes_2BL_A0FFC447F.15 PAC:31764425 |
Low | No | 2498 | Get ORF Coding potential... Type: noncoding Potential: -0.412 Folding energies... MFEI: -25.296 AMFE: -0.672 GC content %: 37.630 | |
| Taestivum_Traes_2BL_A0FFC447F.16 Traes_2BL_A0FFC447F.16 PAC:31764426 |
Low | No | 3056 | Get ORF Coding potential... Type: noncoding Potential: -0.430 Folding energies... MFEI: -27.628 AMFE: -0.655 GC content %: 42.179 | |
| Taestivum_Traes_2BL_A0FFC447F.17 Traes_2BL_A0FFC447F.17 PAC:31764428 |
Low | No | 2351 | Get ORF Coding potential... Type: noncoding Potential: -0.349 Folding energies... MFEI: -24.687 AMFE: -0.663 GC content %: 37.261 | |
| Taestivum_Traes_2BL_A0FFC447F.18 Traes_2BL_A0FFC447F.18 PAC:31764427 |
Low | No | 2489 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -29.012 AMFE: -0.659 GC content %: 44.034 | |
| Taestivum_Traes_2BL_A0FFC447F.19 Traes_2BL_A0FFC447F.19 PAC:31764429 |
Low | No | 2694 | Get ORF Coding potential... Type: noncoding Potential: -1.284 Folding energies... MFEI: -28.805 AMFE: -0.670 GC content %: 42.984 | |
| Taestivum_Traes_2BL_A0FFC447F.2 Traes_2BL_A0FFC447F.2 PAC:31764412 |
Low | No | 2345 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -28.896 AMFE: -0.653 GC content %: 44.222 | |
| Taestivum_Traes_2BL_A0FFC447F.20 Traes_2BL_A0FFC447F.20 PAC:31764431 |
Low | No | 2313 | Get ORF Coding potential... Type: noncoding Potential: -0.483 Folding energies... MFEI: -29.192 AMFE: -0.663 GC content %: 44.055 | |
| Taestivum_Traes_2BL_A0FFC447F.21 Traes_2BL_A0FFC447F.21 PAC:31764433 |
Low | No | 1769 | Get ORF Coding potential... Type: noncoding Potential: -0.449 Folding energies... MFEI: -26.597 AMFE: -0.698 GC content %: 38.101 | |
| Taestivum_Traes_2BL_A0FFC447F.22 Traes_2BL_A0FFC447F.22 PAC:31764439 |
Low | No | 2413 | Get ORF Coding potential... Type: noncoding Potential: -0.487 Folding energies... MFEI: -29.208 AMFE: -0.671 GC content %: 43.556 | |
| Taestivum_Traes_2BL_A0FFC447F.23 Traes_2BL_A0FFC447F.23 PAC:31764438 |
Low | No | 1980 | Get ORF Coding potential... Type: noncoding Potential: -0.506 Folding energies... MFEI: -29.909 AMFE: -0.656 GC content %: 45.606 | |
| Taestivum_Traes_2BL_A0FFC447F.24 Traes_2BL_A0FFC447F.24 PAC:31764430 |
Low | No | 1867 | Get ORF Coding potential... Type: noncoding Potential: -0.395 Folding energies... MFEI: -30.900 AMFE: -0.662 GC content %: 46.652 | |
| Taestivum_Traes_2BL_A0FFC447F.25 Traes_2BL_A0FFC447F.25 PAC:31764437 |
Low | No | 2264 | Get ORF Coding potential... Type: noncoding Potential: -0.482 Folding energies... MFEI: -29.373 AMFE: -0.660 GC content %: 44.523 | |
| Taestivum_Traes_2BL_A0FFC447F.26 Traes_2BL_A0FFC447F.26 PAC:31764434 |
Low | No | 2729 | Get ORF Coding potential... Type: noncoding Potential: -0.420 Folding energies... MFEI: -28.476 AMFE: -0.660 GC content %: 43.129 | |
| Taestivum_Traes_2BL_A0FFC447F.27 Traes_2BL_A0FFC447F.27 PAC:31764436 |
Low | No | 1990 | Get ORF Coding potential... Type: noncoding Potential: -0.506 Folding energies... MFEI: -30.095 AMFE: -0.659 GC content %: 45.678 | |
| Taestivum_Traes_2BL_A0FFC447F.28 Traes_2BL_A0FFC447F.28 PAC:31764435 |
Low | No | 2733 | Get ORF Coding potential... Type: noncoding Potential: -0.421 Folding energies... MFEI: -28.405 AMFE: -0.658 GC content %: 43.139 | |
| Taestivum_Traes_2BL_A0FFC447F.29 Traes_2BL_A0FFC447F.29 PAC:31764440 |
Low | No | 651 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -27.312 AMFE: -0.708 GC content %: 38.556 | |
| Taestivum_Traes_2BL_A0FFC447F.3 Traes_2BL_A0FFC447F.3 PAC:31764413 |
Low | No | 1913 | Get ORF Coding potential... Type: noncoding Potential: -0.448 Folding energies... MFEI: -31.166 AMFE: -0.668 GC content %: 46.628 | |
| Taestivum_Traes_2BL_A0FFC447F.30 Traes_2BL_A0FFC447F.30 PAC:31764441 |
High | No | 1235 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -31.279 AMFE: -0.637 GC content %: 49.069 | |
| Taestivum_Traes_2BL_A0FFC447F.31 Traes_2BL_A0FFC447F.31 PAC:31764442 |
Low | No | 1896 | Get ORF Coding potential... Type: noncoding Potential: -0.498 Folding energies... MFEI: -30.538 AMFE: -0.663 GC content %: 46.044 | |
| Taestivum_Traes_2BL_A0FFC447F.32 Traes_2BL_A0FFC447F.32 PAC:31764443 |
Low | No | 2243 | Get ORF Coding potential... Type: noncoding Potential: -0.484 Folding energies... MFEI: -29.514 AMFE: -0.666 GC content %: 44.316 | |
| Taestivum_Traes_2BL_A0FFC447F.4 Traes_2BL_A0FFC447F.4 PAC:31764416 |
Low | No | 1598 | Get ORF Coding potential... Type: noncoding Potential: -1.152 Folding energies... MFEI: -31.934 AMFE: -0.669 GC content %: 47.747 | |
| Taestivum_Traes_2BL_A0FFC447F.5 Traes_2BL_A0FFC447F.5 PAC:31764415 |
Low | No | 1778 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -30.832 AMFE: -0.673 GC content %: 45.782 | |
| Taestivum_Traes_2BL_A0FFC447F.6 Traes_2BL_A0FFC447F.6 PAC:31764414 |
Low | No | 2178 | Get ORF Coding potential... Type: noncoding Potential: -0.420 Folding energies... MFEI: -29.013 AMFE: -0.658 GC content %: 44.077 | |
| Taestivum_Traes_2BL_A0FFC447F.7 Traes_2BL_A0FFC447F.7 PAC:31764418 |
Low | No | 2662 | Get ORF Coding potential... Type: noncoding Potential: -0.366 Folding energies... MFEI: -28.163 AMFE: -0.668 GC content %: 42.186 | |
| Taestivum_Traes_2BL_A0FFC447F.8 Traes_2BL_A0FFC447F.8 PAC:31764417 |
Low | No | 2911 | Get ORF Coding potential... Type: noncoding Potential: -0.374 Folding energies... MFEI: -27.633 AMFE: -0.655 GC content %: 42.219 | |
| Taestivum_Traes_2BL_A0FFC447F.9 Traes_2BL_A0FFC447F.9 PAC:31764421 |
Low | No | 1967 | Get ORF Coding potential... Type: noncoding Potential: -0.335 Folding energies... MFEI: -29.888 AMFE: -0.659 GC content %: 45.348 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
