GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BL_A61DD929F Traes_2BL_A61DD929F	ta_iwgsc_2bl_v1_7935675	6653	13307	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BL_A61DD929F.15 Traes_2BL_A61DD929F.15 PAC:32025447	Low	No	880		Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -34.307 AMFE: -0.586 GC content %: 58.523
Taestivum_Traes_2BL_A61DD929F.16 Traes_2BL_A61DD929F.16 PAC:32025448	High	No	1360		Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -25.926 AMFE: -0.654 GC content %: 39.632
Taestivum_Traes_2BL_A61DD929F.17 Traes_2BL_A61DD929F.17 PAC:32025450	Low	No	910		Get ORF Coding potential... Type: noncoding Potential: -0.243 Folding energies... MFEI: -25.165 AMFE: -0.645 GC content %: 39.011
Taestivum_Traes_2BL_A61DD929F.18 Traes_2BL_A61DD929F.18 PAC:32025449	Low	No	970		Get ORF Coding potential... Type: noncoding Potential: -0.178 Folding energies... MFEI: -26.093 AMFE: -0.666 GC content %: 39.175
Taestivum_Traes_2BL_A61DD929F.19 Traes_2BL_A61DD929F.19 PAC:32025451	Low	No	929		Get ORF Coding potential... Type: noncoding Potential: -0.169 Folding energies... MFEI: -26.028 AMFE: -0.645 GC content %: 40.366
Taestivum_Traes_2BL_A61DD929F.20 Traes_2BL_A61DD929F.20 PAC:32025452	Low	No	958		Get ORF Coding potential... Type: noncoding Potential: -1.307 Folding energies... MFEI: -26.420 AMFE: -0.652 GC content %: 40.501
Taestivum_Traes_2BL_A61DD929F.22 Traes_2BL_A61DD929F.22 PAC:32025454	Low	No	892		Get ORF Coding potential... Type: noncoding Potential: -0.301 Folding energies... MFEI: -24.372 AMFE: -0.638 GC content %: 38.229
Taestivum_Traes_2BL_A61DD929F.23 Traes_2BL_A61DD929F.23 PAC:32025455	Low	No	958		Get ORF Coding potential... Type: noncoding Potential: -0.310 Folding energies... MFEI: -26.044 AMFE: -0.646 GC content %: 40.292
Taestivum_Traes_2BL_A61DD929F.24 Traes_2BL_A61DD929F.24 PAC:32025459	Low	No	1067		Get ORF Coding potential... Type: noncoding Potential: -0.327 Folding energies... MFEI: -26.261 AMFE: -0.664 GC content %: 39.550
Taestivum_Traes_2BL_A61DD929F.25 Traes_2BL_A61DD929F.25 PAC:32025457	Low	No	1009		Get ORF Coding potential... Type: noncoding Potential: -0.041 Folding energies... MFEI: -26.303 AMFE: -0.663 GC content %: 39.643
Taestivum_Traes_2BL_A61DD929F.26 Traes_2BL_A61DD929F.26 PAC:32025456	Low	No	1012		Get ORF Coding potential... Type: noncoding Potential: -0.041 Folding energies... MFEI: -24.832 AMFE: -0.658 GC content %: 37.747
Taestivum_Traes_2BL_A61DD929F.27 Traes_2BL_A61DD929F.27 PAC:32025458	Low	No	932		Get ORF Coding potential... Type: noncoding Potential: -0.302 Folding energies... MFEI: -25.461 AMFE: -0.641 GC content %: 39.700
Taestivum_Traes_2BL_A61DD929F.28 Traes_2BL_A61DD929F.28 PAC:32025460	Low	No	903		Get ORF Coding potential... Type: noncoding Potential: -0.295 Folding energies... MFEI: -26.091 AMFE: -0.647 GC content %: 40.310

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).