GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BL_B489E2801 Traes_2BL_B489E2801	ta_iwgsc_2bl_v1_8045172	14430	16500	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BL_B489E2801.1 Traes_2BL_B489E2801.1 PAC:31836446	High	No	864		Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -39.132 AMFE: -0.678 GC content %: 57.755
Taestivum_Traes_2BL_B489E2801.2 Traes_2BL_B489E2801.2 PAC:31836445	High	No	1190		Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -40.092 AMFE: -0.707 GC content %: 56.723

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).