Gene
Taestivum Traes 2BL BD46DF7F8
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2BL_BD46DF7F8 Traes_2BL_BD46DF7F8 |
ta_iwgsc_2bl_v1_7988452 | 5568 | 10516 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2BL_BD46DF7F8.1 Traes_2BL_BD46DF7F8.1 PAC:31910022 |
High | No | 832 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -26.334 AMFE: -0.646 GC content %: 40.745 | |
| Taestivum_Traes_2BL_BD46DF7F8.10 Traes_2BL_BD46DF7F8.10 PAC:31910025 |
High | No | 859 | Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -30.361 AMFE: -0.622 GC content %: 48.778 | |
| Taestivum_Traes_2BL_BD46DF7F8.11 Traes_2BL_BD46DF7F8.11 PAC:31910028 |
High | No | 661 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -26.702 AMFE: -0.639 GC content %: 41.755 | |
| Taestivum_Traes_2BL_BD46DF7F8.12 Traes_2BL_BD46DF7F8.12 PAC:31910029 |
High | No | 770 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -26.013 AMFE: -0.644 GC content %: 40.390 | |
| Taestivum_Traes_2BL_BD46DF7F8.5 Traes_2BL_BD46DF7F8.5 PAC:31910021 |
High | No | 1973 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -24.222 AMFE: -0.659 GC content %: 36.746 | |
| Taestivum_Traes_2BL_BD46DF7F8.6 Traes_2BL_BD46DF7F8.6 PAC:31910023 |
High | No | 1142 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -28.940 AMFE: -0.624 GC content %: 46.410 | |
| Taestivum_Traes_2BL_BD46DF7F8.7 Traes_2BL_BD46DF7F8.7 PAC:31910024 |
High | No | 1137 | Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -27.458 AMFE: -0.580 GC content %: 47.318 | |
| Taestivum_Traes_2BL_BD46DF7F8.8 Traes_2BL_BD46DF7F8.8 PAC:31910026 |
High | No | 540 | Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -25.944 AMFE: -0.625 GC content %: 41.481 | |
| Taestivum_Traes_2BL_BD46DF7F8.9 Traes_2BL_BD46DF7F8.9 PAC:31910027 |
High | No | 497 | Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -27.022 AMFE: -0.631 GC content %: 42.857 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
