Gene
Taestivum Traes 2BL C32D30AF6
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2BL_C32D30AF6 Traes_2BL_C32D30AF6 |
ta_iwgsc_2bl_v1_7958053 | 11925 | 14624 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2BL_C32D30AF6.1 Traes_2BL_C32D30AF6.1 PAC:32002539 |
Low | No | 707 | Get ORF Coding potential... Type: noncoding Potential: -0.058 Folding energies... MFEI: -21.528 AMFE: -0.534 GC content %: 40.311 | |
| Taestivum_Traes_2BL_C32D30AF6.10 Traes_2BL_C32D30AF6.10 PAC:32002544 |
Low | No | 1183 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -25.283 AMFE: -0.604 GC content %: 41.843 | |
| Taestivum_Traes_2BL_C32D30AF6.11 Traes_2BL_C32D30AF6.11 PAC:32002548 |
Low | No | 1599 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -24.665 AMFE: -0.619 GC content %: 39.837 | |
| Taestivum_Traes_2BL_C32D30AF6.12 Traes_2BL_C32D30AF6.12 PAC:32002549 |
Low | No | 1476 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -25.427 AMFE: -0.621 GC content %: 40.921 | |
| Taestivum_Traes_2BL_C32D30AF6.13 Traes_2BL_C32D30AF6.13 PAC:32002546 |
Low | No | 1495 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -25.318 AMFE: -0.632 GC content %: 40.067 | |
| Taestivum_Traes_2BL_C32D30AF6.14 Traes_2BL_C32D30AF6.14 PAC:32002543 |
Low | No | 1831 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -25.216 AMFE: -0.619 GC content %: 40.743 | |
| Taestivum_Traes_2BL_C32D30AF6.15 Traes_2BL_C32D30AF6.15 PAC:32002545 |
Low | No | 2281 | Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -25.292 AMFE: -0.630 GC content %: 40.158 | |
| Taestivum_Traes_2BL_C32D30AF6.17 Traes_2BL_C32D30AF6.17 PAC:32002553 |
Low | No | 1643 | Get ORF Coding potential... Type: noncoding Potential: -0.294 Folding energies... MFEI: -24.912 AMFE: -0.609 GC content %: 40.901 | |
| Taestivum_Traes_2BL_C32D30AF6.18 Traes_2BL_C32D30AF6.18 PAC:32002554 |
Low | No | 1985 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -25.053 AMFE: -0.620 GC content %: 40.403 | |
| Taestivum_Traes_2BL_C32D30AF6.19 Traes_2BL_C32D30AF6.19 PAC:32002555 |
Low | No | 1219 | Get ORF Coding potential... Type: noncoding Potential: -0.262 Folding energies... MFEI: -25.111 AMFE: -0.609 GC content %: 41.263 | |
| Taestivum_Traes_2BL_C32D30AF6.2 Traes_2BL_C32D30AF6.2 PAC:32002536 |
Low | No | 812 | Get ORF Coding potential... Type: noncoding Potential: -0.101 Folding energies... MFEI: -23.990 AMFE: -0.583 GC content %: 41.133 | |
| Taestivum_Traes_2BL_C32D30AF6.20 Traes_2BL_C32D30AF6.20 PAC:32002556 |
Low | No | 1847 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -24.759 AMFE: -0.620 GC content %: 39.957 | |
| Taestivum_Traes_2BL_C32D30AF6.21 Traes_2BL_C32D30AF6.21 PAC:32002551 |
Low | No | 1809 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -25.732 AMFE: -0.640 GC content %: 40.188 | |
| Taestivum_Traes_2BL_C32D30AF6.3 Traes_2BL_C32D30AF6.3 PAC:32002537 |
Low | No | 1100 | Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -24.382 AMFE: -0.605 GC content %: 40.273 | |
| Taestivum_Traes_2BL_C32D30AF6.6 Traes_2BL_C32D30AF6.6 PAC:32002541 |
Low | No | 1021 | Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -23.506 AMFE: -0.583 GC content %: 40.353 | |
| Taestivum_Traes_2BL_C32D30AF6.7 Traes_2BL_C32D30AF6.7 PAC:32002542 |
Low | No | 1173 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -22.839 AMFE: -0.594 GC content %: 38.448 | |
| Taestivum_Traes_2BL_C32D30AF6.8 Traes_2BL_C32D30AF6.8 PAC:32002547 |
Low | No | 1075 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -24.316 AMFE: -0.589 GC content %: 41.302 | |
| Taestivum_Traes_2BL_C32D30AF6.9 Traes_2BL_C32D30AF6.9 PAC:32002550 |
Low | No | 1369 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -24.719 AMFE: -0.620 GC content %: 39.883 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
