Gene
Taestivum Traes 2BL CEE8B43AB
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2BL_CEE8B43AB Traes_2BL_CEE8B43AB |
ta_iwgsc_2bl_v1_7965872 | 772 | 5098 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2BL_CEE8B43AB.1 Traes_2BL_CEE8B43AB.1 PAC:31844109 |
High | No | 1708 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -28.121 AMFE: -0.643 GC content %: 43.735 | |
| Taestivum_Traes_2BL_CEE8B43AB.10 Traes_2BL_CEE8B43AB.10 PAC:31844116 |
High | No | 3216 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -26.486 AMFE: -0.650 GC content %: 40.765 | |
| Taestivum_Traes_2BL_CEE8B43AB.11 Traes_2BL_CEE8B43AB.11 PAC:31844119 |
High | No | 3632 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -26.462 AMFE: -0.662 GC content %: 39.950 | |
| Taestivum_Traes_2BL_CEE8B43AB.12 Traes_2BL_CEE8B43AB.12 PAC:31844120 |
High | No | 2950 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -27.305 AMFE: -0.658 GC content %: 41.492 | |
| Taestivum_Traes_2BL_CEE8B43AB.13 Traes_2BL_CEE8B43AB.13 PAC:31844114 |
High | No | 3318 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -26.697 AMFE: -0.652 GC content %: 40.928 | |
| Taestivum_Traes_2BL_CEE8B43AB.14 Traes_2BL_CEE8B43AB.14 PAC:31844118 |
High | No | 3891 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -26.949 AMFE: -0.665 GC content %: 40.555 | |
| Taestivum_Traes_2BL_CEE8B43AB.15 Traes_2BL_CEE8B43AB.15 PAC:31844123 |
High | No | 3027 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -27.251 AMFE: -0.662 GC content %: 41.196 | |
| Taestivum_Traes_2BL_CEE8B43AB.16 Traes_2BL_CEE8B43AB.16 PAC:31844121 |
High | No | 3648 | Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -26.513 AMFE: -0.664 GC content %: 39.912 | |
| Taestivum_Traes_2BL_CEE8B43AB.17 Traes_2BL_CEE8B43AB.17 PAC:31844122 |
High | No | 3678 | Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -26.626 AMFE: -0.663 GC content %: 40.185 | |
| Taestivum_Traes_2BL_CEE8B43AB.19 Traes_2BL_CEE8B43AB.19 PAC:31844128 |
High | No | 3075 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -26.966 AMFE: -0.652 GC content %: 41.366 | |
| Taestivum_Traes_2BL_CEE8B43AB.20 Traes_2BL_CEE8B43AB.20 PAC:31844130 |
High | No | 3019 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -27.502 AMFE: -0.658 GC content %: 41.802 | |
| Taestivum_Traes_2BL_CEE8B43AB.21 Traes_2BL_CEE8B43AB.21 PAC:31844127 |
High | No | 2632 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -26.752 AMFE: -0.657 GC content %: 40.691 | |
| Taestivum_Traes_2BL_CEE8B43AB.22 Traes_2BL_CEE8B43AB.22 PAC:31844126 |
High | No | 1642 | Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -27.436 AMFE: -0.637 GC content %: 43.057 | |
| Taestivum_Traes_2BL_CEE8B43AB.23 Traes_2BL_CEE8B43AB.23 PAC:31844132 |
High | No | 1682 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -28.080 AMFE: -0.643 GC content %: 43.698 | |
| Taestivum_Traes_2BL_CEE8B43AB.24 Traes_2BL_CEE8B43AB.24 PAC:31844133 |
High | No | 2430 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -26.576 AMFE: -0.650 GC content %: 40.864 | |
| Taestivum_Traes_2BL_CEE8B43AB.25 Traes_2BL_CEE8B43AB.25 PAC:31844129 |
High | No | 2088 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -27.284 AMFE: -0.647 GC content %: 42.146 | |
| Taestivum_Traes_2BL_CEE8B43AB.26 Traes_2BL_CEE8B43AB.26 PAC:31844125 |
High | No | 2228 | Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -26.813 AMFE: -0.646 GC content %: 41.517 | |
| Taestivum_Traes_2BL_CEE8B43AB.27 Traes_2BL_CEE8B43AB.27 PAC:31844131 |
High | No | 3811 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -26.413 AMFE: -0.658 GC content %: 40.147 | |
| Taestivum_Traes_2BL_CEE8B43AB.28 Traes_2BL_CEE8B43AB.28 PAC:31844134 |
High | No | 3692 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -26.349 AMFE: -0.659 GC content %: 40.005 | |
| Taestivum_Traes_2BL_CEE8B43AB.29 Traes_2BL_CEE8B43AB.29 PAC:31844135 |
High | No | 3085 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -27.135 AMFE: -0.654 GC content %: 41.491 | |
| Taestivum_Traes_2BL_CEE8B43AB.30 Traes_2BL_CEE8B43AB.30 PAC:31844136 |
High | No | 2959 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -27.688 AMFE: -0.662 GC content %: 41.805 | |
| Taestivum_Traes_2BL_CEE8B43AB.31 Traes_2BL_CEE8B43AB.31 PAC:31844138 |
High | No | 1727 | Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -28.900 AMFE: -0.654 GC content %: 44.181 | |
| Taestivum_Traes_2BL_CEE8B43AB.32 Traes_2BL_CEE8B43AB.32 PAC:31844137 |
High | No | 2445 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -27.472 AMFE: -0.658 GC content %: 41.759 | |
| Taestivum_Traes_2BL_CEE8B43AB.33 Traes_2BL_CEE8B43AB.33 PAC:31844139 |
High | No | 1870 | Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -31.963 AMFE: -0.659 GC content %: 48.503 | |
| Taestivum_Traes_2BL_CEE8B43AB.34 Traes_2BL_CEE8B43AB.34 PAC:31844141 |
High | No | 2187 | Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -28.976 AMFE: -0.643 GC content %: 45.039 | |
| Taestivum_Traes_2BL_CEE8B43AB.35 Traes_2BL_CEE8B43AB.35 PAC:31844140 |
High | No | 1864 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -27.634 AMFE: -0.636 GC content %: 43.455 | |
| Taestivum_Traes_2BL_CEE8B43AB.36 Traes_2BL_CEE8B43AB.36 PAC:31844142 |
High | No | 2444 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -26.645 AMFE: -0.653 GC content %: 40.794 | |
| Taestivum_Traes_2BL_CEE8B43AB.4 Traes_2BL_CEE8B43AB.4 PAC:31844110 |
High | No | 1697 | Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -29.252 AMFE: -0.650 GC content %: 45.021 | |
| Taestivum_Traes_2BL_CEE8B43AB.5 Traes_2BL_CEE8B43AB.5 PAC:31844111 |
High | No | 1749 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -28.496 AMFE: -0.647 GC content %: 44.025 | |
| Taestivum_Traes_2BL_CEE8B43AB.6 Traes_2BL_CEE8B43AB.6 PAC:31844112 |
High | No | 1086 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -32.735 AMFE: -0.646 GC content %: 50.645 | |
| Taestivum_Traes_2BL_CEE8B43AB.7 Traes_2BL_CEE8B43AB.7 PAC:31844113 |
High | No | 2852 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -27.276 AMFE: -0.647 GC content %: 42.146 | |
| Taestivum_Traes_2BL_CEE8B43AB.8 Traes_2BL_CEE8B43AB.8 PAC:31844117 |
High | No | 3756 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -26.387 AMFE: -0.659 GC content %: 40.069 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
