GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_2BL_D9D644AE3 Traes_2BL_D9D644AE3	ta_iwgsc_2bl_v1_8006925	2383	3220	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_2BL_D9D644AE3.1 Traes_2BL_D9D644AE3.1 PAC:31751874	High	No	318		Get ORF Coding potential... Type: noncoding Potential: -0.297 Folding energies... MFEI: -46.069 AMFE: -0.651 GC content %: 70.755
Taestivum_Traes_2BL_D9D644AE3.2 Traes_2BL_D9D644AE3.2 PAC:31751875	High	No	574		Get ORF Coding potential... Type: noncoding Potential: -0.463 Folding energies... MFEI: -39.965 AMFE: -0.687 GC content %: 58.188
Taestivum_Traes_2BL_D9D644AE3.3 Traes_2BL_D9D644AE3.3 PAC:31751876	High	No	282		Get ORF Coding potential... Type: noncoding Potential: -0.618 Folding energies... MFEI: -43.582 AMFE: -0.634 GC content %: 68.794
Taestivum_Traes_2BL_D9D644AE3.4 Traes_2BL_D9D644AE3.4 PAC:31751877	High	No	312		Get ORF Coding potential... Type: noncoding Potential: -1.234 Folding energies... MFEI: -36.571 AMFE: -0.671 GC content %: 54.487

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).