Gene
Taestivum Traes 2BL E094710DC
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2BL_E094710DC Traes_2BL_E094710DC |
ta_iwgsc_2bl_v1_8089912 | 3981 | 9796 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2BL_E094710DC.1 Traes_2BL_E094710DC.1 PAC:31771149 |
Low | No | 2300 | Get ORF Coding potential... Type: noncoding Potential: -0.226 Folding energies... MFEI: -32.839 AMFE: -0.656 GC content %: 50.043 | |
| Taestivum_Traes_2BL_E094710DC.10 Traes_2BL_E094710DC.10 PAC:31771135 |
Low | No | 1940 | Get ORF Coding potential... Type: noncoding Potential: -0.200 Folding energies... MFEI: -34.727 AMFE: -0.668 GC content %: 51.959 | |
| Taestivum_Traes_2BL_E094710DC.11 Traes_2BL_E094710DC.11 PAC:31771133 |
Low | No | 2557 | Get ORF Coding potential... Type: noncoding Potential: -0.246 Folding energies... MFEI: -33.136 AMFE: -0.670 GC content %: 49.433 | |
| Taestivum_Traes_2BL_E094710DC.12 Traes_2BL_E094710DC.12 PAC:31771132 |
Low | No | 2571 | Get ORF Coding potential... Type: noncoding Potential: -0.136 Folding energies... MFEI: -33.403 AMFE: -0.676 GC content %: 49.397 | |
| Taestivum_Traes_2BL_E094710DC.13 Traes_2BL_E094710DC.13 PAC:31771136 |
Low | No | 2541 | Get ORF Coding potential... Type: noncoding Potential: -0.246 Folding energies... MFEI: -33.373 AMFE: -0.677 GC content %: 49.311 | |
| Taestivum_Traes_2BL_E094710DC.14 Traes_2BL_E094710DC.14 PAC:31771137 |
Low | No | 2550 | Get ORF Coding potential... Type: noncoding Potential: -0.246 Folding energies... MFEI: -33.216 AMFE: -0.675 GC content %: 49.216 | |
| Taestivum_Traes_2BL_E094710DC.15 Traes_2BL_E094710DC.15 PAC:31771138 |
Low | No | 2535 | Get ORF Coding potential... Type: noncoding Potential: -0.246 Folding energies... MFEI: -33.247 AMFE: -0.674 GC content %: 49.349 | |
| Taestivum_Traes_2BL_E094710DC.17 Traes_2BL_E094710DC.17 PAC:31771140 |
Low | No | 2525 | Get ORF Coding potential... Type: noncoding Potential: -0.245 Folding energies... MFEI: -33.469 AMFE: -0.669 GC content %: 50.059 | |
| Taestivum_Traes_2BL_E094710DC.18 Traes_2BL_E094710DC.18 PAC:31771144 |
Low | No | 2418 | Get ORF Coding potential... Type: noncoding Potential: -0.137 Folding energies... MFEI: -33.470 AMFE: -0.673 GC content %: 49.711 | |
| Taestivum_Traes_2BL_E094710DC.19 Traes_2BL_E094710DC.19 PAC:31771143 |
Low | No | 2054 | Get ORF Coding potential... Type: noncoding Potential: -0.093 Folding energies... MFEI: -34.499 AMFE: -0.657 GC content %: 52.532 | |
| Taestivum_Traes_2BL_E094710DC.2 Traes_2BL_E094710DC.2 PAC:31771125 |
Low | No | 2498 | Get ORF Coding potential... Type: noncoding Potential: -0.244 Folding energies... MFEI: -33.407 AMFE: -0.679 GC content %: 49.199 | |
| Taestivum_Traes_2BL_E094710DC.20 Traes_2BL_E094710DC.20 PAC:31771142 |
Low | No | 2548 | Get ORF Coding potential... Type: noncoding Potential: -0.135 Folding energies... MFEI: -33.548 AMFE: -0.669 GC content %: 50.157 | |
| Taestivum_Traes_2BL_E094710DC.21 Traes_2BL_E094710DC.21 PAC:31771141 |
Low | No | 2004 | Get ORF Coding potential... Type: noncoding Potential: -0.090 Folding energies... MFEI: -35.120 AMFE: -0.668 GC content %: 52.595 | |
| Taestivum_Traes_2BL_E094710DC.22 Traes_2BL_E094710DC.22 PAC:31771145 |
Low | No | 1861 | Get ORF Coding potential... Type: noncoding Potential: -0.241 Folding energies... MFEI: -35.137 AMFE: -0.662 GC content %: 53.090 | |
| Taestivum_Traes_2BL_E094710DC.23 Traes_2BL_E094710DC.23 PAC:31771146 |
Low | No | 1588 | Get ORF Coding potential... Type: noncoding Potential: -0.231 Folding energies... MFEI: -37.746 AMFE: -0.672 GC content %: 56.171 | |
| Taestivum_Traes_2BL_E094710DC.24 Traes_2BL_E094710DC.24 PAC:31771150 |
Low | No | 2465 | Get ORF Coding potential... Type: noncoding Potential: -0.239 Folding energies... MFEI: -33.043 AMFE: -0.661 GC content %: 49.980 | |
| Taestivum_Traes_2BL_E094710DC.25 Traes_2BL_E094710DC.25 PAC:31771155 |
Low | No | 2495 | Get ORF Coding potential... Type: noncoding Potential: -0.244 Folding energies... MFEI: -33.391 AMFE: -0.679 GC content %: 49.178 | |
| Taestivum_Traes_2BL_E094710DC.26 Traes_2BL_E094710DC.26 PAC:31771148 |
Low | No | 2298 | Get ORF Coding potential... Type: noncoding Potential: -0.237 Folding energies... MFEI: -33.386 AMFE: -0.680 GC content %: 49.086 | |
| Taestivum_Traes_2BL_E094710DC.27 Traes_2BL_E094710DC.27 PAC:31771151 |
Low | No | 2665 | Get ORF Coding potential... Type: noncoding Potential: -0.250 Folding energies... MFEI: -32.173 AMFE: -0.675 GC content %: 47.692 | |
| Taestivum_Traes_2BL_E094710DC.28 Traes_2BL_E094710DC.28 PAC:31771153 |
Low | No | 2052 | Get ORF Coding potential... Type: noncoding Potential: -0.206 Folding energies... MFEI: -34.259 AMFE: -0.653 GC content %: 52.485 | |
| Taestivum_Traes_2BL_E094710DC.29 Traes_2BL_E094710DC.29 PAC:31771152 |
Low | No | 2143 | Get ORF Coding potential... Type: noncoding Potential: -0.168 Folding energies... MFEI: -34.671 AMFE: -0.655 GC content %: 52.916 | |
| Taestivum_Traes_2BL_E094710DC.3 Traes_2BL_E094710DC.3 PAC:31771126 |
Low | No | 2055 | Get ORF Coding potential... Type: noncoding Potential: -0.206 Folding energies... MFEI: -35.212 AMFE: -0.668 GC content %: 52.701 | |
| Taestivum_Traes_2BL_E094710DC.30 Traes_2BL_E094710DC.30 PAC:31771147 |
Low | No | 1527 | Get ORF Coding potential... Type: noncoding Potential: -0.172 Folding energies... MFEI: -34.309 AMFE: -0.677 GC content %: 50.688 | |
| Taestivum_Traes_2BL_E094710DC.31 Traes_2BL_E094710DC.31 PAC:31771154 |
Low | No | 1884 | Get ORF Coding potential... Type: noncoding Potential: -0.200 Folding energies... MFEI: -35.393 AMFE: -0.675 GC content %: 52.442 | |
| Taestivum_Traes_2BL_E094710DC.32 Traes_2BL_E094710DC.32 PAC:31771156 |
Low | No | 1990 | Get ORF Coding potential... Type: noncoding Potential: -0.199 Folding energies... MFEI: -34.925 AMFE: -0.663 GC content %: 52.663 | |
| Taestivum_Traes_2BL_E094710DC.33 Traes_2BL_E094710DC.33 PAC:31771157 |
Low | No | 2460 | Get ORF Coding potential... Type: noncoding Potential: -0.243 Folding energies... MFEI: -33.183 AMFE: -0.665 GC content %: 49.919 | |
| Taestivum_Traes_2BL_E094710DC.4 Traes_2BL_E094710DC.4 PAC:31771128 |
Low | No | 2592 | Get ORF Coding potential... Type: noncoding Potential: -0.137 Folding energies... MFEI: -33.256 AMFE: -0.672 GC content %: 49.498 | |
| Taestivum_Traes_2BL_E094710DC.5 Traes_2BL_E094710DC.5 PAC:31771127 |
Low | No | 2589 | Get ORF Coding potential... Type: noncoding Potential: -0.136 Folding energies... MFEI: -33.221 AMFE: -0.671 GC content %: 49.517 | |
| Taestivum_Traes_2BL_E094710DC.6 Traes_2BL_E094710DC.6 PAC:31771129 |
Low | No | 2430 | Get ORF Coding potential... Type: noncoding Potential: -0.242 Folding energies... MFEI: -32.798 AMFE: -0.662 GC content %: 49.547 | |
| Taestivum_Traes_2BL_E094710DC.8 Traes_2BL_E094710DC.8 PAC:31771131 |
High | No | 1382 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -33.849 AMFE: -0.671 GC content %: 50.434 | |
| Taestivum_Traes_2BL_E094710DC.9 Traes_2BL_E094710DC.9 PAC:31771134 |
Low | No | 2409 | Get ORF Coding potential... Type: noncoding Potential: -0.130 Folding energies... MFEI: -33.068 AMFE: -0.669 GC content %: 49.440 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
