Gene
Taestivum Traes 2BL EE33C2AD8
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_2BL_EE33C2AD8 Traes_2BL_EE33C2AD8 |
ta_iwgsc_2bl_v1_8011566 | 1863 | 6507 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_2BL_EE33C2AD8.10 Traes_2BL_EE33C2AD8.10 PAC:31801639 |
High | No | 4054 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -26.051 AMFE: -0.606 GC content %: 42.970 | |
| Taestivum_Traes_2BL_EE33C2AD8.11 Traes_2BL_EE33C2AD8.11 PAC:31801643 |
High | No | 1587 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -28.910 AMFE: -0.563 GC content %: 51.355 | |
| Taestivum_Traes_2BL_EE33C2AD8.12 Traes_2BL_EE33C2AD8.12 PAC:31801641 |
High | No | 1845 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -29.696 AMFE: -0.571 GC content %: 52.033 | |
| Taestivum_Traes_2BL_EE33C2AD8.13 Traes_2BL_EE33C2AD8.13 PAC:31801640 |
High | No | 3514 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -26.770 AMFE: -0.600 GC content %: 44.593 | |
| Taestivum_Traes_2BL_EE33C2AD8.14 Traes_2BL_EE33C2AD8.14 PAC:31801642 |
High | No | 1595 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -28.840 AMFE: -0.564 GC content %: 51.160 | |
| Taestivum_Traes_2BL_EE33C2AD8.15 Traes_2BL_EE33C2AD8.15 PAC:31801644 |
High | No | 1029 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -30.078 AMFE: -0.591 GC content %: 50.923 | |
| Taestivum_Traes_2BL_EE33C2AD8.16 Traes_2BL_EE33C2AD8.16 PAC:31801650 |
High | No | 3422 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -26.859 AMFE: -0.605 GC content %: 44.389 | |
| Taestivum_Traes_2BL_EE33C2AD8.17 Traes_2BL_EE33C2AD8.17 PAC:31801649 |
High | No | 1332 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -29.580 AMFE: -0.569 GC content %: 52.027 | |
| Taestivum_Traes_2BL_EE33C2AD8.18 Traes_2BL_EE33C2AD8.18 PAC:31801646 |
High | No | 1761 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -29.926 AMFE: -0.573 GC content %: 52.243 | |
| Taestivum_Traes_2BL_EE33C2AD8.19 Traes_2BL_EE33C2AD8.19 PAC:31801645 |
High | No | 819 | Get ORF Coding potential... Type: noncoding Potential: -0.867 Folding energies... MFEI: -28.474 AMFE: -0.482 GC content %: 59.096 | |
| Taestivum_Traes_2BL_EE33C2AD8.20 Traes_2BL_EE33C2AD8.20 PAC:31801648 |
High | No | 3985 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -26.025 AMFE: -0.605 GC content %: 43.011 | |
| Taestivum_Traes_2BL_EE33C2AD8.21 Traes_2BL_EE33C2AD8.21 PAC:31801647 |
High | No | 1502 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -29.221 AMFE: -0.567 GC content %: 51.531 | |
| Taestivum_Traes_2BL_EE33C2AD8.9 Traes_2BL_EE33C2AD8.9 PAC:31801638 |
High | No | 1431 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -26.338 AMFE: -0.632 GC content %: 41.649 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
